---
topic:
  - Sequence analysis
  - Structure analysis
scopes:
  - name: summary
    function:
      - Multiple Sequence Alignment
      - Sequence Alignment visualisation
      - Phylogenetic tree visualisation
      - Sequence annotation
      - Sequence clustering
      - Protein secondary structure prediction
      - RNA secondary structure prediction
    inputs:
      - data: Sequence alignment
        formats:
          - FASTA-aln
          - FASTA
          - Stockholm format
          - ClustalW format
          - MSF
          - Pileup
          - nbrf/pir
          # -pfam missing format, needs adding in EDAM
          - BLC
          # -jalview
    outputs:
      - data: Alignment
        formats:
          - FASTA-aln
          - FASTA
          - Stockholm format
          - ClustalW format
          - MSF
          - Pileup
          - nbrf/pir
          # -pfam missing format, needs adding in EDAM
          - BLC
          # -jalview
          - PNG
          # -imgmap HTML image map format, not in EDAM
          - EPS
          - SVG
